Export a list of datasets format to a CAKE study file

In addition to the datasets, the pathways in the degradation model can be specified as well.

Usage

CAKE_export(
  ds,
  map = c(parent = "Parent"),
  links = NA,
  filename = "CAKE_export.csf",
  path = ".",
  overwrite = FALSE,
  study = "Degradinol aerobic soil degradation",
  description = "",
  time_unit = "days",
  res_unit = "% AR",
  comment = "",
  date = Sys.Date(),
  optimiser = "IRLS"
)

Arguments

ds: A named list of datasets in long format as compatible with mkinfit.
map: A character vector with CAKE compartment names (Parent, A1, ...), named with the names used in the list of datasets.
links: An optional character vector of target compartments, named with the names of the source compartments. In order to make this easier, the names are used as in the datasets supplied.
filename: Where to write the result. Should end in .csf in order to be compatible with CAKE.
path: An optional path to the output file.
overwrite: If TRUE, existing files are overwritten.
study: The name of the study.
description: An optional description.
time_unit: The time unit for the residue data.
res_unit: The unit used for the residues.
comment: An optional comment.
date: The date of file creation.
optimiser: Can be OLS or IRLS.

Value

The function is called for its side effect.

Author

Johannes Ranke